DESeq2 in the browser

DESeq2 is a Bioconductor package for differential gene expression analysis.

Currently, DESeq2/Bioconductor aren't available in webR's binary repository. (webR allows you to run R code in the browser and comes with an R interpreter and default binary package repository.)

To run DESeq2 in the browser, I've compiled the package and its dependencies manually to the format required by webR. Live demo below.

The demo is a simple example of DESeq2 usage. You can paste your own count data, column data, and design formula and immediately see the results.

Demo: In-browser DESeq2


See also

Made by Anton Vasetenkov.

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