DESeq2 in the browser

DESeq2 is a Bioconductor package for differential gene expression analysis.

Currently, DESeq2/Bioconductor aren't available in webR's binary repository. (webR allows you to run R code in the browser and comes with an R interpreter and default binary package repository.)

To run DESeq2 in the browser, I've compiled the package and its dependencies manually to the format required by webR. Live demo below.

The demo is a simple example of DESeq2 usage. You can paste your own count data, column data, and design formula and immediately see the results.

Demo: In-browser DESeq2

See also

• WebLogo in the browser - Bringing WebLogo to the browser + demo of a pure client side sequence logo maker.
• BLAST WASM - Compiling the BLAST sequence search/alignment tool to WASM.
• WikiPathways: A Wikipedia for biological pathways - An overview of the collaboratively edited structured pathway encyclopedia.
• The RDF model of the Gene Ontology, demystified - An outline of the structure of the Gene Ontology RDF graph and ways to query it.
• WASM ports - A list of software compiled to/ported to WebAssembly/JavaScript.
• RDKit WASM - Running RDKit in the browser with WebAssembly.
• Phonetic Analyzer - A web-based phonetic analyzer built on top of Praat.
• FreeType WASM - A WASM port of the FreeType library.
• Font Parser - An online tool for parsing font files.
• Erlang/OTP WASM (Erlang in the browser) - Execute Erlang code in the browser.
• The ambitious challenge of finishing the human genome - Generating a complete human genome sequence, chromosome by chromosome.
• Scalable genomic alignment with Progressive Cactus - How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.