- Anton V.
- Projects and blogs
- Bio- and cheminformatics
- PDB Editor
PDB Editor
A simple online editor for Protein Data Bank (PDB) files.
untitled.pdb — PDB Editor
See also
- PDB to FASTA - Extract protein/nucleotide sequences from PDB files.
- The RDF model of the Gene Ontology, demystified - An outline of the structure of the Gene Ontology RDF graph and ways to query it.
- BLAST WASM (In-browser NCBI BLAST) - Compiling the BLAST sequence search/alignment tool to WASM.
- DESeq2 in the browser - Running DESeq2 in the browser.
- FASTQ to FASTA - Convert FASTQ files to FASTA format.
- ABI to FASTA - Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.
- GenBank to FASTA - Convert GenBank flat files to FASTA format.
- Phylogenetic Tree Builder - Reconstruct phylogenetic trees from protein or DNA/RNA sequence alignments.
- Sequence Logo Generator - Create sequence logos from FASTA alignments.
- Genome Browser - Explore the human genome.
- Sequence Alignment Viewer - Open FASTA files in the browser.
- Phylogenetic Tree Editor - An online visual editor for phylogenetic trees.
- Plasmid Map Generator - A tool to generate plasmid maps from GenBank files.
- NCBI Taxonomy Browser - A simple tool for viewing the NCBI taxonomy tree.
- What is FASTA and how is it used? - Learn about the FASTA format and its applications.
- FASTA Parse Tree Viewer - Visualize the parse tree of FASTA files.
- Newick Parse Tree Viewer - View the parse trees of Newick strings.
- 3D Mol Viewer - View molecular models in 3D.
- Scalable genomic alignment with Progressive Cactus - How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.
- The ambitious challenge of finishing the human genome - Generating a complete human genome sequence, chromosome by chromosome.
- WikiPathways: A Wikipedia for biological pathways - An overview of the collaboratively edited structured pathway encyclopedia.
- Bioinformatics Crossword - A daily crossword puzzle for bioinformatics terms.
- FASTA Editor - A simple online editor for biological sequences in the FASTA format.
- FASTQ Editor - A simple online editor for biological sequences in the FASTQ format.
- Newick Editor - A simple online editor for phylogenetic trees in the Newick format.
- GenBank Flat File Editor - A simple online editor for the GenBank flat file format.
- Clustal Editor - A simple online editor for Clustal multiple sequence alignment files.
- PDBx/mmCIF Editor - A simple online editor for PDBx/mmCIF files.
- EMBL Flat File Editor - A simple online editor for the EMBL flat file format.
- Awesome bioinformatics - A curated list of awesome links, tutorials, and resources on bioinformatics and related topics.
Made by Anton Vasetenkov in Auckland, New Zealand. me if you want to discuss a project.