Sequence Alignment Viewer

About the tool

The tool allows you to open FASTA files from your computer and view the sequence alignments.

Demo

ferredoxins.fa — Sequence Alignment Viewer
1
2
3
4
5
6
7
8
9
1
0
1
1
1
2
1
3
1
4
1
5
.
.
.
.
5
.
.
.
.
10
.
.
.
.
15
.
.
.
.
20
.
.
.
.
25
.
.
.
.
30
.
.
.
.
35
.
.
.
.
40
.
.
.
.
45
.
.
.
.
50
.
.
.
.
55
.
.
.
.
60
.
.
.
.
65
.
.
.
.
70
.
.
.
.
75
.
.
.
.
80
.
.
.
.
85
.
.
.
.
90
.
.
.
.
95
.
.
.
.
100
.
.
.
.
105
.
.
.
.
110
.
.
.
.
115
.
.
.
.
120
.
.
.
.
125
.
.
.
.
130
.
.
.
.
135
.
.
.
.
140
.
.
.
.
145
.
.
.
.
150
.
.
.
.
155
.
.
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A
S
Y
K
V
K
L
I
T
P
D
G
P
I
E
F
D
C
P
D
D
V
Y
I
L
D
Q
A
E
E
A
G
H
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
I
A
G
G
A
V
D
Q
T
D
G
N
F
L
D
D
D
Q
L
E
E
G
W
V
L
T
C
V
A
Y
P
Q
S
D
V
T
I
E
T
H
K
E
A
E
L
V
G
-
M
A
-
-
-
-
-
-
S
V
S
A
T
M
I
S
T
S
F
M
P
R
K
P
A
V
T
S
L
-
K
P
I
P
N
V
G
E
-
-
A
L
F
G
L
K
S
-
A
-
-
N
G
G
K
V
T
C
M
A
S
Y
K
V
K
L
I
T
P
D
G
P
I
E
F
D
C
P
D
N
V
Y
I
L
D
Q
A
E
E
A
G
H
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
I
A
G
G
A
V
D
Q
T
D
G
N
F
L
D
D
D
Q
L
E
E
G
W
V
L
T
C
V
A
Y
P
Q
S
D
V
T
I
E
T
H
K
E
A
E
L
V
G
-
M
A
-
-
-
-
-
-
S
I
S
G
T
M
I
S
T
S
F
L
P
R
K
P
A
V
T
S
L
-
K
A
I
S
N
V
G
E
-
-
A
L
F
G
L
K
S
-
G
-
-
R
N
G
R
I
T
C
M
A
S
Y
K
V
K
L
I
T
P
E
G
P
I
E
F
E
C
P
D
D
V
Y
I
L
D
Q
A
E
E
E
G
H
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
T
A
G
S
V
D
Q
S
D
G
N
F
L
D
E
D
Q
E
A
A
G
F
V
L
T
C
V
A
Y
P
K
G
D
V
T
I
E
T
H
K
E
E
E
L
T
A
-
M
A
-
-
-
-
-
-
S
I
S
G
T
M
I
S
T
S
F
L
P
R
K
P
V
V
T
S
L
-
K
A
I
S
N
V
G
E
-
-
A
L
F
G
L
K
S
-
G
-
-
R
N
G
R
I
T
C
M
A
S
Y
K
V
K
L
I
T
P
D
G
P
I
E
F
E
C
P
D
D
V
Y
I
L
D
Q
A
E
E
E
G
H
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
T
A
G
T
V
D
Q
S
D
G
K
F
L
D
D
D
Q
E
A
A
G
F
V
L
T
C
V
A
Y
P
K
C
D
V
T
I
E
T
H
K
E
E
E
L
T
A
-
M
A
T
T
-
-
-
P
A
L
Y
G
T
A
V
S
T
S
F
L
R
T
Q
P
M
P
M
S
V
-
T
T
T
K
A
F
S
N
-
-
G
F
L
G
L
K
T
-
S
L
K
R
G
D
L
A
V
A
M
A
S
Y
K
V
K
L
V
T
P
D
G
T
Q
E
F
E
C
P
S
D
V
Y
I
L
D
H
A
E
E
V
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
G
G
E
V
D
Q
S
D
G
S
F
L
D
D
E
Q
I
E
A
G
F
V
L
T
C
V
A
Y
P
T
S
D
V
V
I
E
T
H
K
E
E
D
L
T
A
-
M
A
T
T
-
-
-
P
A
L
Y
G
T
A
V
S
T
S
F
M
R
R
Q
P
V
P
M
S
V
-
A
T
T
T
T
T
K
A
F
P
S
G
F
G
L
K
S
V
S
T
K
R
G
D
L
A
V
A
M
A
T
Y
K
V
K
L
I
T
P
E
G
P
Q
E
F
D
C
P
D
D
V
Y
I
L
D
H
A
E
E
V
G
I
E
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
N
G
N
V
N
Q
E
D
G
S
F
L
D
D
E
Q
I
E
G
G
W
V
L
T
C
V
A
F
P
T
S
D
V
T
I
E
T
H
K
E
E
E
L
T
A
-
M
A
A
T
-
-
T
A
A
L
S
G
A
T
M
S
T
A
F
A
P
K
-
-
T
P
P
M
T
A
A
L
P
T
N
V
G
R
-
-
A
L
F
G
L
K
S
-
S
A
S
R
-
G
R
V
T
A
M
A
A
Y
K
V
T
L
V
T
P
E
G
K
Q
E
L
E
C
P
D
D
V
Y
I
L
D
A
A
E
E
A
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
T
S
G
S
V
N
Q
D
D
G
S
F
L
D
D
D
Q
I
K
E
G
W
V
L
T
C
V
A
Y
P
T
G
D
V
T
I
E
T
H
K
E
E
E
L
T
A
-
M
A
A
T
-
-
T
T
T
M
M
G
-
-
M
A
T
T
F
V
P
K
P
Q
A
P
P
M
M
A
A
L
P
S
N
T
G
R
-
-
S
L
F
G
L
K
T
-
G
S
R
-
-
G
G
R
M
T
M
A
A
Y
K
V
T
L
V
T
P
T
G
N
V
E
F
Q
C
P
D
D
V
Y
I
L
D
A
A
E
E
E
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
L
K
T
G
S
L
N
Q
D
D
Q
S
F
L
D
D
D
Q
I
D
E
G
W
V
L
T
C
A
A
Y
P
V
S
D
V
T
I
E
T
H
K
E
E
E
L
T
A
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A
T
Y
K
V
K
F
I
T
P
E
G
E
Q
E
V
E
C
D
D
D
V
Y
V
L
D
A
A
E
E
A
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
V
D
Q
S
D
Q
S
F
L
D
D
D
Q
I
A
E
G
F
V
L
T
C
A
A
Y
P
T
S
D
V
T
I
E
T
H
R
E
E
D
M
V
-
-
M
A
S
T
-
-
-
-
A
L
S
S
A
I
V
G
T
S
F
I
R
R
S
P
A
P
I
S
L
R
S
L
P
S
A
N
T
Q
-
-
S
L
F
G
L
K
S
-
G
T
A
R
G
G
R
V
T
A
M
A
T
Y
K
V
K
F
I
T
P
E
G
E
L
E
V
E
C
D
D
D
V
Y
V
L
D
A
A
E
E
A
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
V
D
Q
S
D
Q
S
F
L
D
D
E
Q
I
G
E
G
F
V
L
T
C
A
A
Y
P
T
S
D
V
T
I
E
T
H
K
E
E
D
I
V
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A
T
Y
K
V
K
F
I
T
P
E
G
E
Q
E
V
E
C
D
D
D
V
Y
V
L
D
A
A
E
E
A
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
F
V
D
Q
S
D
E
S
F
L
D
D
D
Q
I
A
E
G
F
V
L
T
C
A
A
Y
P
T
S
D
V
T
I
E
T
H
K
E
E
E
L
V
-
-
M
A
S
T
-
-
-
-
A
L
S
S
A
I
V
S
T
S
F
L
R
R
Q
Q
T
P
I
S
L
R
S
L
P
F
A
N
T
Q
-
-
S
L
F
G
L
K
S
-
S
T
A
R
G
G
R
V
T
A
M
A
T
Y
K
V
K
F
I
T
P
E
G
E
Q
E
V
E
C
E
E
D
V
Y
V
L
D
A
A
E
E
A
G
L
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
I
D
Q
S
D
Q
S
F
L
D
D
E
Q
M
S
E
G
Y
V
L
T
C
V
A
Y
P
T
S
D
V
V
I
E
T
H
K
E
E
A
I
M
-
-
M
A
S
T
-
-
-
-
A
L
S
S
A
I
V
S
T
S
F
L
R
R
Q
Q
T
P
I
S
L
R
S
L
P
F
A
N
T
Q
-
-
S
L
F
G
L
K
S
-
S
T
A
R
G
G
R
V
T
A
M
A
T
Y
K
V
K
F
I
T
P
E
G
E
Q
E
V
E
C
E
E
D
V
Y
V
L
D
A
A
E
E
A
G
L
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
I
D
Q
S
D
Q
S
F
L
D
D
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
M
A
T
V
L
G
S
P
R
A
P
A
F
F
F
S
S
S
S
L
R
A
A
P
A
P
T
A
V
-
-
A
L
P
A
A
K
V
-
-
G
I
M
G
R
S
A
-
S
S
R
R
-
-
R
L
R
A
Q
A
T
Y
N
V
K
L
I
T
P
E
G
E
V
E
L
Q
V
P
D
D
V
Y
I
L
D
Q
A
E
E
D
G
I
D
L
P
Y
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
V
D
Q
S
D
Q
S
Y
L
D
D
G
Q
I
A
D
G
W
V
L
T
C
H
A
Y
P
T
S
D
V
V
I
E
T
H
K
E
E
E
L
T
G
A
M
A
A
T
-
-
-
-
-
-
-
-
-
A
L
S
M
S
I
L
R
-
-
-
A
P
P
P
C
F
S
S
P
L
R
L
R
V
-
-
A
V
A
K
P
L
A
-
A
P
M
R
R
Q
L
L
R
A
Q
A
T
Y
N
V
K
L
I
T
P
E
G
E
V
E
L
Q
V
P
D
D
V
Y
I
L
D
F
A
E
E
E
G
I
D
L
P
F
S
C
R
A
G
S
C
S
S
C
A
G
K
V
V
S
G
S
V
D
Q
S
D
Q
S
F
L
N
D
N
Q
V
A
D
G
W
V
L
T
C
A
A
Y
P
T
S
D
V
V
I
E
T
H
K
E
D
D
L
L
-
-

See also

Learn about the FASTA format and its applications.
FASTA, bioinformatics
Convert FASTQ files to FASTA format.
FASTQ, FASTA, bioinformatics
Create pretty sequence logo diagrams online.
bioinformatics, sequence analysis, FASTA
Edit PDB files online.
bioinformatics, PDB, editors
An overview of the collaboratively edited structured pathway encyclopedia.
bioinformatics
A WASM port of the MUSCLE sequence alignment tool.
MUSCLE, WASM, bioinformatics
A tool to generate plasmid maps from GenBank files.
bioinformatics
An outline of the structure of the Gene Ontology RDF graph and ways to query it.
bioinformatics, RDF, ontologies
How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.
bioinformatics
A WASM port of MrBayes.
MrBayes, WASM, bioinformatics
Generating a complete human genome sequence, chromosome by chromosome.
bioinformatics, genomics
Explore the human genome.
bioinformatics, genomics

Made by Anton Vasetenkov.

If you want to say hi, you can reach me on LinkedIn or via email. If you like my work, you can support me by buying me a coffee.