NCBI Taxonomy Browser

A simple tool for viewing the NCBI taxonomy tree.

cellular organisms

Archaea

Bacteria

Eukaryota

Viruses

other entries

other sequences

unclassified entries

unclassified sequences

See also

The RDF model of the Gene Ontology, demystified - An outline of the structure of the Gene Ontology RDF graph and ways to query it.

BLAST WASM (In-browser NCBI BLAST) - Compiling the BLAST sequence search/alignment tool to WASM.

DESeq2 in the browser - Running DESeq2 in the browser.

PDB to FASTA - Extract protein/nucleotide sequences from PDB files.

FASTQ to FASTA - Convert FASTQ files to FASTA format.

ABI to FASTA - Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.

GenBank to FASTA - Convert GenBank flat files to FASTA format.

Phylogenetic Tree Builder - Reconstruct phylogenetic trees from protein or DNA/RNA sequence alignments.

Sequence Logo Generator - Create sequence logos from FASTA alignments.

Genome Browser - Explore the human genome.

Sequence Alignment Viewer - Open FASTA files in the browser.

Phylogenetic Tree Editor - An online visual editor for phylogenetic trees.

Plasmid Map Generator - A tool to generate plasmid maps from GenBank files.

What is FASTA and how is it used? - Learn about the FASTA format and its applications.

FASTA Parse Tree Viewer - Visualize the parse tree of FASTA files.

Newick Parse Tree Viewer - View the parse trees of Newick strings.

Scalable genomic alignment with Progressive Cactus - How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.

The ambitious challenge of finishing the human genome - Generating a complete human genome sequence, chromosome by chromosome.

WikiPathways: A Wikipedia for biological pathways - An overview of the collaboratively edited structured pathway encyclopedia.

Bioinformatics Crossword - A daily crossword puzzle for bioinformatics terms.

FASTA Editor - A simple online editor for biological sequences in the FASTA format.

FASTQ Editor - A simple online editor for biological sequences in the FASTQ format.

Newick Editor - A simple online editor for phylogenetic trees in the Newick format.

PDB Editor - A simple online editor for Protein Data Bank (PDB) files.

GenBank Flat File Editor - A simple online editor for the GenBank flat file format.

Clustal Editor - A simple online editor for Clustal multiple sequence alignment files.

PDBx/mmCIF Editor - A simple online editor for PDBx/mmCIF files.

EMBL Flat File Editor - A simple online editor for the EMBL flat file format.

Awesome bioinformatics - A curated list of awesome links, tutorials, and resources on bioinformatics and related topics.