Anton V.
Projects and blogs
Bio- and cheminformatics
Newick Parse Tree Viewer

Newick Parse Tree Viewer

Newick tree

(A:0.1,B:0.2,(C:0.3,D:0.4):0.5);1
(A:0.1,B:0.2,(C:0.3,D:0.4):0.5);

Parse tree

R
tree_:Tree_
R
rootInternal:RootInternal
T
"("
R
branch:Branch
R
subtree:Subtree
R
leaf:Leaf
R
name:Name
T
STRING:"A"
R
length:Length
T
":"
T
NUMBER:"0.1"
T
","
R
branchSet:BranchSet
R
branch:Branch
R
subtree:Subtree
R
leaf:Leaf
R
name:Name
T
STRING:"B"
R
length:Length
T
":"
T
NUMBER:"0.2"
T
","
R
branchSet:BranchSet
R
branch:Branch
R
subtree:Subtree
R
internal_:Internal_
T
"("
R
branchSet:BranchSet
R
branch:Branch
R
subtree:Subtree
R
leaf:Leaf
R
name:Name
T
STRING:"C"
R
length:Length
T
":"
T
NUMBER:"0.3"
T
","
R
branchSet:BranchSet
R
branch:Branch
R
subtree:Subtree
R
leaf:Leaf
R
name:Name
T
STRING:"D"
R
length:Length
T
":"
T
NUMBER:"0.4"
T
")"
R
name:Name
R
length:Length
T
":"
T
NUMBER:"0.5"
T
")"
R
name:Name
T
";"
T
"<EOF>"

Newick Parse Tree Viewer

See also

Newick Editor - A simple online editor for phylogenetic trees in the Newick format.
Phylogenetic Tree Builder - Reconstruct phylogenetic trees from protein or DNA/RNA sequence alignments.
Phylogenetic Tree Editor - An online visual editor for phylogenetic trees.
The RDF model of the Gene Ontology, demystified - An outline of the structure of the Gene Ontology RDF graph and ways to query it.
BLAST WASM (In-browser NCBI BLAST) - Compiling the BLAST sequence search/alignment tool to WASM.
DESeq2 in the browser - Running DESeq2 in the browser.
PDB to FASTA - Extract protein/nucleotide sequences from PDB files.
FASTQ to FASTA - Convert FASTQ files to FASTA format.
ABI to FASTA - Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.
GenBank to FASTA - Convert GenBank flat files to FASTA format.
Sequence Logo Generator - Create sequence logos from FASTA alignments.
Genome Browser - Explore the human genome.
Sequence Alignment Viewer - Open FASTA files in the browser.
Plasmid Map Generator - A tool to generate plasmid maps from GenBank files.
NCBI Taxonomy Browser - A simple tool for viewing the NCBI taxonomy tree.
What is FASTA and how is it used? - Learn about the FASTA format and its applications.
FASTA Parse Tree Viewer - Visualize the parse tree of FASTA files.
Scalable genomic alignment with Progressive Cactus - How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.
The ambitious challenge of finishing the human genome - Generating a complete human genome sequence, chromosome by chromosome.
WikiPathways: A Wikipedia for biological pathways - An overview of the collaboratively edited structured pathway encyclopedia.
Bioinformatics Crossword - A daily crossword puzzle for bioinformatics terms.
FASTA Editor - A simple online editor for biological sequences in the FASTA format.
FASTQ Editor - A simple online editor for biological sequences in the FASTQ format.
PDB Editor - A simple online editor for Protein Data Bank (PDB) files.
GenBank Flat File Editor - A simple online editor for the GenBank flat file format.
Clustal Editor - A simple online editor for Clustal multiple sequence alignment files.
PDBx/mmCIF Editor - A simple online editor for PDBx/mmCIF files.
EMBL Flat File Editor - A simple online editor for the EMBL flat file format.
Awesome bioinformatics - A curated list of awesome links, tutorials, and resources on bioinformatics and related topics.

Made by Anton Vasetenkov in Auckland, New Zealand. me if you want to discuss a project.